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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 548 Check: 0 ..
Name: PDP1 Len: 548 Check: 8689 Weight: 0.75
Name: PDP2 Len: 548 Check: 6179 Weight: 0.75
Name: CG12151_DROME Len: 548 Check: 4562 Weight: 1.49
Name: Consensus Len: 548 Check: 7243 Weight: 0.00
//
1 60
PDP1 MPAPTQLFFP LIRNCELSRI YGTACYCHHK HLCCSSSYIP QSRLRYTPHP AYATFCRPKE
PDP2 MSSTVSYW ILNSTRNSIA TLQGGRRLYS RYVSNRNKLK WRLFSRVPPT LNSSPCGGFT
CG12151_DR MFKFV LNDAASYVRS
Consensus .......... .......s.. .......... .......... .......p.. ln...c....
61 120
PDP1 NWWQYTQGRR YASTPQKFYL TPPQVNSILK ANEYSFKVPE FDGKMSVLSL DLTAIKLPAN
PDP2 LCKAYRHTST -EEDDFHLQL SPEQINEVLR AGETTHKILD LESRVPNSVL RFESNQLAAN
CG12151_DR NVREFSLNAL -RLLPQLPQL SPYDVNLVLR ENEFVYNFP- ----VDGVIR SYETNQLGSN
Consensus n...%..... ....pq..qL sP.#!N.!Lr anE...k.p. ....v....l ..e.nqL.aN
121 180
PDP1 APIEDRRSAA TCLQTRGMLL GVFDGHAGCA WSQAVSERLF YYIAGSLVPH ETLLEIENAV
PDP2 SPVEDRRGVA SCLQTNGLMF GIFDGHGGHA CAQAVSERLF YYVAVSLMSH QTLEHMEGAM
CG12151_DR WPCEDSRTEA SFLHRNGFIC GIFDGHAGAA CGQVVSKRLL RYVSAATLPR QVLRE---QM
Consensus .P.EDrR..A scLqtnG... G!FDGHaG.A c.QaVSeRLf yY!a.sl.ph #tL.e.e.am
181 240
PDP1 ESGRALLPIL QWHKHPNDYF SKEASKLYFN SLRTYWQELI DLNTGESTDI DVKEALINAF
PDP2 ESMKPLLPIL HWLKHPGDSI YKDVTSVHLD HLRVYWQELL DLHM--EMGL SIEEALMYSF
CG12151_DR KQGADSQSFL KCHNDNVDFV SM-IKPMYEA SFLKYVNQLL E-----TPQR DVSSELVNAF
Consensus esg..llpiL .whkhp.D.. sk.....y.. slr.Yw##Ll #l........ d!.eaL.naF
241 300
PDP1 KRLDNDISLE AQVGDPNSFL NYLVLRVAFS GATACVAHVD GVDLHVANTG DSRAMLGVQE
PDP2 QRLDSDISLE IQAPLEDEVT RNLSLQVAFS GATACMAHVD GIHLHVANAG DCRAILGVQE
CG12151_DR LQLDEEISQE ALTSNDVRTM N-----VALS GAVACLVHIE GLQMHVASTG DCGAVLGVLD
Consensus .rLD.#ISlE aq........ n.l.l.VAfS GAtAC.aH!# G..$HVAntG DcrA.LGVq#
301 360
PDP1 -EDGSWSAVT LSNDHNAQNE RELERLKLEH PKSEAKSVVK QDRLLGLLMP FRAFGDVKFK
PDP2 -DNGMWSCLP LTRDHNAWNQ AELSRLKREH PESEDRTIIM EDRLLGVLIP CRAFGDVQLK
CG12151_DR PQTQQWHSKK LNIEHNADNM SEVRRILAEH PKEEHETVIR NGRLLSQLAP LRAFGDFRYK
Consensus .#.g.Ws... L..#HNA.N. .El.Rlk.EH PksE..t!!. #dRLLg.L.P .RAFGDv..K
361 420
PDP1 WSIDLQKRVI ESGPDQLNDN EYTKFIPPNY HTPPYLTAEP EVTYHRLRPQ DKFLVLATDG
PDP2 WSKELQRSIL ERGFNTEALN IY-QFTPPHY YTPPYLTAEP EVTYHRLRPQ DKFLVLASDG
CG12151_DR WSQEIMQQKV LPMFGVQA-- -----MAPNY YTPPYLTARP DVQQHELGPN DKFLVIASDG
Consensus WS.#lq.... e.gf...a.n .y..f.pPnY yTPPYLTAeP #VtyHrLrP# DKFLVlAsDG
421 480
PDP1 LWETMHRQDV VRIVGEYLTG MHHQQPIAVG GYKVTLGQMH GLLTERRTKM SSVFEDQNAA
PDP2 LWDMLSNEDV VRLVVGHLAE ADWHKT-DLA QRPANLGLMQ SLLLQRKASG LHE-ADQNAA
CG12151_DR LWDFLPPSEV VSLVGEHINS KKILEPMRLP EGDTTLQEIS QQLAERKAGL TRKPVDQNAA
Consensus LW#.$...#V VrlVgehl.. .....p..l. ....tLg.m. .lL.#Rka.. .....DQNAA
481 540
PDP1 THLIRHAVGN NEFGTVDHER LSKMLSLPEE LARMYRDDIT IIVVQFNSHV VGAYQNQEK
PDP2 TRLIRHAIGN NEYGEMEAER LAAMLTLPED LARMYRDDIT VTVVYFNSES IGAYYKGG
CG12151_DR THLIRHALGG TDYG-IEHSK ISYYLTLPRD AVRLYRDDIT ITVIYFNSEH IAKLHSDVDQ
Consensus ThLIRHA.Gn n#%G..#her ls.mLtLPe# laR$YRDDIT !tV!yFNSe. !gay......
541
PDP1
PDP2
CG12151_DR TEVTAPVA
Consensus ........