anni precedenti

Quello che segue è un archivio (parziale) delle pubblicazioni del nostro personale e di altre professionalità che negli anni hanno collaborato con il nostro Istituto riportato per ragioni “storiche“.

2003

CHIRONNA M., GROTTOLA A., LANAVE C., VILLA E., BARBUTI S. AND QUARTO M.
Genetic analysis of HAV strains recovered from patients with acute hepatitis from Southern Italy.
J Med Virol., 2003,70(3):343-9

D’ERCHIA A.M, TULLO A., PESOLE G., SACCONE C., SBISA’ E.
p53 gene family: functional and evolutionary features
Current Genomics, 2003,(4):13-26

Grillo G., Licciulli F., Liuni S., Sbisa E. and Pesole G.
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences.
Nucleic Acids Research, 2003,31(13) 3608-3612

Lioi L., Sparvoli F., Galasso I., Lanave C. and Bolini R.
Lectin-related resistance factors against bruchids evolved through a number of duplication events.
Theor Appl Genet, 2003,107:814 – 822

Miccoli M.C., Vaccarelli G., Antonacci G.R., Lanave C., Massari S., Cribiu, E.P. and Ciccarese S. Evolution of TRG clusters in cattle and sheep genomes is enlighten by the structural analysis of the ovine TRG2@ LOCUS.
J. Mol. Evol., 2003,57:52-62

Mignone F., Grillo G., Liuni S., Pesole G.
Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis.
Nucleic Acids Rese., 2003,31: 4639-4645

RAINALDI G., VOLPICELLA M., LICCIULLI F., LIUNI S., GALLERANI R. and CECI L. R.
PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes
Nucleic Acids Res., 2003,31(1):436-438

SACCONE C.
Mitochondrial Genome in Encyclopedia of the Human Genome EHG
Nature, 2003

SACCONE C., CAGGESE C., D’ERCHIA A. M., LANAVE C., OLIVA M., PESOLE G.
Molecular Clock and Gene Function.
J. Mol. Evol., 2003,57:1-9

SACCONE C., PESOLE G.
Handbook of comparative Genomics: principles and methodology
Editor: Wiley-Liss, 2003

SARDIELLO M., LICIULLI F., CATALANO D., ATTIMONELLI M., and CAGGESE C.
MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion
Nucleic Acids Res., 2003,31(1):322-324

TULLO A., D’ERCHIA A. M. AND SBISA’ E.
Methods for screening tumours for p53 status and therapeutic exploitation
Expert Review of Molecular Diagnosis., 2003,3(3):289-301

TULLO A., MASTROPASQUA G., BOURDON J. C., CENTONZE P., GOSTISSA M., COSTANZO A., LEVRERO M., DEL SAL G., SACCONE C. AND SBISA’ E.
Adenosine Deaminase, a key enzyme in DNA precursors control, is a new p73 target.
Oncogene. 2003,22(54):8738-48

2002

ATTIMONELLI M., CATALANO D., GISSI C., GRILLO G., LICCIULLI F., LIUNI S., SANTAMARIA M., PESOLE G., SACCONE C.
MITONUC : a database of nuclear genes coding for mitochondrial proteins. Update 2002.
Nucleic Acids Res., 2002,30(1):172-3

LARIZZA A., MAKALOWSKI W., PESOLE G., SACCONE C.
Evolutionary dynamics of mammalian mRNA untranslated regions by comparative analysis of orthologous human, artiodactyl and rodent gene pairs.
Comput Chem, 2002,26(5): 479-90

LARIZZA A., PESOLE G., REYES A., SBISA’ E., SACCONE C.
Lineage specificity of the evolutionary dynamics of the mtDNA D-Loop region in rodents
J. Mol. Evol., 2002,54(2):145-155

MEZZINA M., REYES A., D’ERRICO I., GADALETA G.
Characterization of the mtTFA gene and identification of a processed pseudogene in rat.
Gene, 2002,286:105-112

MIGNONE F., GISSI C., LIUNI S., AND PESOLE G.
Untranslated regions of mRNAs.
Genome Biology, 2002,3(3): Reviews0004. Epub 2002 Feb 28. Review.

PESOLE G, LIUNI S, GRILLO G, LICCIULLI F, MIGNONE F, GISSI C, SACCONE C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic Acids Res., 2002,30(1):335-40

REYES A., MEZZINA M., GADALETA G.
Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes.
Gene, 2002,291:223-232

SACCCONE C., BAROME PO., D’ERCHIA A.M, D’ERRICO I., PESOLE G., SBISA’ E., TULLO A.
Molecular strategies in metazoan genomic evolution.
GENE, 2002,300:195-201

SACCONE C., GISSI C., REYES A., LARIZZA A., SBISA’ E., PESOLE G.
Mitochondrial DNA in metazoa: degree of freedom in a frozen event
GENE, 2002,286(1):3-12

TOMMASEO-PONZETTA M, ATTIMONELLI M, DE ROBERTIS M, TANZARIELLO F, SACCONE C.
Mitochondrial DNA variability of West New Guinea populations.
Am J Phys Anthropol., 2002,117(1):49-67

TULLO A. and SBISA’ E.
Molecular characterization of p53 mutations in primary and secondary liver tumors: diagnostic and therapeutic perspectives.
Mol Biotechnol., 2002,21(3):265-78

2001

PESOLE G., SACCONE C.
A novel method to estimate substitution rate variation among sites in large dataset of homologous DNA sequences
Genetics, 157:859-865

Damiano F, Gallerani R, Liuni S, Licciulli F, Ceci LR.
PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.
Nucleic Acids Res., 29:167-8

PESOLE G, Mignone F, Gissi C, Grillo G, Licciulli F, Liuni S.
Structural and functional features of eukaryotic mRNA untranslated regions.
Gene. 276:73-81.

MICCOLI MC, LIPSI MR, MASSARI S, LANAVE C, CICCARESE S.
Exon-intron organization of TRGC genes in sheep.
Immunogenetics. 53:416-22.

SPARVOLI F, LANAVE C, SANTUCCI A, BOLLINI R, LIOI L.
Lectin and lectin-related proteins in lima bean (Phaseolus lunatus L.) seeds: biochemical and evolutionary studies.
Plant Mol Biol. 45:587-97.

2000

ATTIMONELLI M., ALTAMURA N., BENNE R., BRENNICKEA., COOPER J. M., D’ELIA D., DEMONTALVO A., DE PINTO B., DE ROBERTIS M., GOLIK P. , KNOOP V., LANAVE C. , LAZOWSKA J., LICCIULLI F., MALLADI B.S., MEMEO F., MONNEROT M., PASIMENI R., PILBOUT S., SCHAPIRA A.H.V., SLOOF P., SACCONE C.
MitBASE: a comprehensive and integrated mitochondrial DNA database. The present status.
Nucleic Acids Research, 2000,28(1):148-152

ATTIMONELLI M., LANAVE C., LIUNI S., PESOLE G., GRILLO G., LICCIULLI F. AND SACCONE C.
Genomica e Bioinformatica. In: Analisi e modifica di biomolecole e di cellule, Gruppo Nazionale di Bioingegneria ( E. Biondi, M. Stefanelli e V. Tagliasco, eds),
Pàtron Editore, Bologna, pp:43-58, 2000.

GISSI C. , REYES A., PESOLE G., SACCONE C.
Lineage-specific evolutionary rate in mammalian mtDNA
Mol. Biol. Evol., 2000,17(7):1022-1031

HAVLIK R., SBISA E., TULLO A., KELLY M. D., MITRY R. R., JIAO L., R. MANSOUR M. R., HONDA K., HABIB N. A.
Results of resection for hilar cholangiocarcinoma with analysis of prognostic factors
Hepato-gastroenterology, 2000,47:927-31

PESOLE G., GISSI C., CATALANO D., GRILLO G., LICCIULLI F., LIUNI S., ATTIMONELLI M., SACCONE C.
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins
Nucleic Acids Research, 2000,28(1):163-165

PESOLE G., LIUNI S., GRILLO G., LICCIULLI F., LARIZZA A., MAKALOWSKI W., SACCONE C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5[prime] and 3[prime]untranslated regions of eukaryotic mRNAs
Nucleic Acids Research, 2000,28(1):193-196

PESOLE G., GISSI C., GRILLO G., LICCIULLI F., LIUNI S., AND SACCONE C.
Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs”
Gene, 2000,261(1) 85-91

REYES, C. GISSI, G. PESOLE, F. CATZEFLIS, C. SACCONE
Where do rodents fit? Evidence from complete mitochondrial genome of Scirus vulgaris
Mol. Biol Evol., 2000,17(6):979-983

REYES A., PESOLE G., SACCONE C.
Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny
GENE, 2000,259(1-2):177–187

SACCONE C., ATTIMONELLI M., LANAVE C., PESOLE G. and SBISA’ E.
Mitochondrial DNA and human diversity: a detailed analysis of the D-loop region. In: The origin of Humankind (E. Aloisi, B. Battaglia, E. Carafoli, G.A. Danieli eds.)
IOS Press, Amsterdam, NL, 2000, pp. 69-78

SACCONE C., GISSI C., LANAVE C., LARIZZA A., PESOLE G., REYES A.
Evolution of the mitochondrial genetic system: an overview
GENE, 2000,261(1):153-159

TULLO A, D’ERCHIA A.M, HONDA K, KELLY MD, HABIB NA, SACCONE C, SBISA’ E.
New p53 mutations in hilar cholangiocarcinoma.
Eur J Clin Invest., 2000,30(9):798-803

1999

ATTIMONELLI M., ALTAMURA N., BENNE R., BOYEN C., BRENNICKE A., CARONE A., J. M. COOPER, D. D’ELIA, de MONTALVO A., dE PINTO B., M. DE ROBERTIS, GOLIK P., GRIENBERGER J. M., KNOOP V., LANAVE C., LAZOWSKA J., LEMAGNEN A., MALLADI S. B., MEMEO F., MONNEROT M., PILBOUT S., SHAPIRA A. H. V., SLOOF P., SLONIMSKY P., STEVENS K. and SACCONE C.
MitBASE: a comprehensive and integrated mithocondrial DNA Database
Nucleic Acid Research, 1999,27(1):128-133

ATTIMONELLI M., COOPER J. M., D’ELIA D., de MONTALVO A., DE ROBERTIS M., LEHVASLAIHO H., MALLADI S. B., MEMEO F., STEVENS K., SHAPIRA A. H. V. and SACCONE C.
Update of the Human mitBASE Database
Nucleic Acid Research, 1999,27(1):143-146

CARONE A., MALLADI S. B., ATTIMONELLI M. and SACCONE C.
Vertebrate MitBASE: a specialized database on vertebrate mitochondrial DNA sequences
Nucleic Acid Research, 1999,27(1):150-152

D’ERCHIA A.M., PESOLE G., TULLO A., SACCONE C., AND SBISA’ E.
Guinea Pig p53 mRNA: identification of New Elements in Coding and Untraslated Regions and Their Functional and Evolutionary Implications
Genomics, 1999,58(1):50-64

LANAVE C., ATTIMONELLI M., DE ROBERTIS M., LICCIULLI F., LIUNI S., SBISA’ E. and SACCONE C.
Update of AMmmtDB: A Database of Multi-Aligned Metazoa Mitochondrial DNA Sequences
Nucleic Acid Research, 1999,27(1):134-137

LARIZZA A., PESOLE G., SACCONE C.
Systematic and evolutionary studies in mammals: the contribution of the mitochondrial genome.
Ital. J. Zool., 1999,66:233-238

PESOLE G., BERNARDI G. and SACCONE C.
Isochore specificity of AUG initiator context of human genes
FEBS Lett., 1999,464:60-62

PESOLE G., GISSI C., DE CHIRICO A. and SACCONE C.
Nucleotide substitution rate of mammalian mitochondrial genomes.
J. Mol. Evol., 1999,48(4):427-434

PESOLE G., LIUNI S., GRILLO G., IPPEDICO M., LARIZZA A., MAKALOWSKI W. and SACCONE C.
UTRdb: a specialized Database of 5′ and 3′ untraslated regions of eukaryotic mRNAs
Nucleic Acid Research, 1999,27(1):188-191

SACCONE C., DE GIORGI C., GISSI C., PESOLE G., REYES A.
Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
GENE, 1999,238(1):195-209

TULLO A., D’ERCHIA A.M., HONDA K., MITRY R.R., KELLY M.D., HABIB N.A., SACCONE C., SBISA’, E.
Characterization of p53 mutations in Colorectal Liver Metastases and correlation with clinical parameters
Clin Cancer Res., 1999,5:3523-3528

1998

ATTIMONELLI M., CALO’ D., COOPER J. M., de MONTALVO A., LICCIULLI F., SASANELLI D., STEVENS K., MALLADI B. S., SACCONE C. and SHAPIRA A. H. V.
The mitBASE human dataset structure
Nucleic Acid Research, 1998,26(1):116-119

ATTIMONELLI M., CALO’ D., COOPER J. M., de MONTALVO A., LANAVE C., SASANELLI D., TOMMASEO PONZETTA M., and SACCONE C.
Update of MmtDB: a Metazoa mitochondrial DNA variants database.
Nucleic Acid Research, 1998,26(1):120-125

HONDA K., SBISA’ E., TULLO A., PAPEO P. A., SACCONE C., POOLE S., PIGNATELLI M., MITRY R. R., DING S., ISLA A., BRANCATISANO R., DAVIES A., HABIB N. A.
p53 mutations is a poor prognostic indicator for survival in patients with hepatocellular carcinoma undergoing surgical tumour ablation
British Journal of Cancer, 1998,77(5), 776-782

PESOLE G., LIUNI S., GRILLO G. and SACCONE C.
UTRDB: a specialized database of 5′ and 3′ untraslated regions of eukaryotic mRNAs
Nucleic Acid Research, 1998,26(1):192-195

REYES A., GISSI C., PESOLE G. and SACCONE C.
Asymmetrical Directional Mutation Pressure in the Mitochondrial Genome of Mammals
Mol. Biol. Evol., 1998,15(8):957-966

REYES A., PESOLE G. and SACCONE C.
Complete Mitochondrial DNA Sequence of the Fat Dormouse, Glis Glis: Further Evidence of Rodent Paraphyly
Mol. Biol. Evol., 1998,15(5):499-505